Artificial Soils Reveal Individual Factor Controls on Microbial Processes

Date
2022
Authors
Del Valle, Ilenne
Gao, Xiaodong
Ghezzehei, Teamrat A.
Silberg, Jonathan J.
Masiello, Caroline A.
Journal Title
Journal ISSN
Volume Title
Publisher
American Society for Microbiology
Unknown
Abstract

Soil matrix properties influence microbial behaviors that underlie nutrient cycling, greenhouse gas production, and soil formation. However, the dynamic and heterogeneous nature of soils makes it challenging to untangle the effects of different matrix properties on microbial behaviors. To address this challenge, we developed a tunable artificial soil recipe and used these materials to study the abiotic mechanisms driving soil microbial growth and communication. When we used standardized matrices with varying textures to culture gas-reporting biosensors, we found that a Gram-negative bacterium (Escherichia coli) grew best in synthetic silt soils, remaining active over a wide range of soil matric potentials, while a Gram-positive bacterium (Bacillus subtilis) preferred sandy soils, sporulating at low water potentials. Soil texture, mineralogy, and alkalinity all attenuated the bioavailability of an acyl-homoserine lactone (AHL) signaling molecule that controls community-level microbial behaviors. Texture controlled the timing of AHL sensing, while AHL bioavailability was decreased ~105-fold by mineralogy and ~103-fold by alkalinity. Finally, we built artificial soils with a range of complexities that converge on the properties of one Mollisol. As artificial soil complexity increased to more closely resemble the Mollisol, microbial behaviors approached those occurring in the natural soil, with the notable exception of organic matter.

Description
Advisor
Degree
Type
Journal article
Keywords
Citation

Del Valle, Ilenne, Gao, Xiaodong, Ghezzehei, Teamrat A., et al.. "Artificial Soils Reveal Individual Factor Controls on Microbial Processes." mSystems, 7, no. 4 (2022) American Society for Microbiology: https://doi.org/10.1128/msystems.00301-22.

Has part(s)
Forms part of
Rights
This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
Citable link to this page