Stochastic fluctuations promote ordered pattern formation of cells in the Notch-Delta signaling pathway
| dc.citation.articleNumber | e1010306 | en_US |
| dc.citation.issueNumber | 7 | en_US |
| dc.citation.journalTitle | PLOS Computational Biology | en_US |
| dc.citation.volumeNumber | 18 | en_US |
| dc.contributor.author | Galbraith, Madeline | en_US |
| dc.contributor.author | Bocci, Federico | en_US |
| dc.contributor.author | Onuchic, José N. | en_US |
| dc.contributor.org | Center for Theoretical Biological Physics | en_US |
| dc.date.accessioned | 2022-09-01T14:18:22Z | en_US |
| dc.date.available | 2022-09-01T14:18:22Z | en_US |
| dc.date.issued | 2022 | en_US |
| dc.description.abstract | The Notch-Delta signaling pathway mediates cell differentiation implicated in many regulatory processes including spatiotemporal patterning in tissues by promoting alternate cell fates between neighboring cells. At the multicellular level, this "lateral inhibition” principle leads to checkerboard patterns with alternation of Sender and Receiver cells. While it is well known that stochasticity modulates cell fate specification, little is known about how stochastic fluctuations at the cellular level propagate during multicell pattern formation. Here, we model stochastic fluctuations in the Notch-Delta pathway in the presence of two different noise types–shot and white–for a multicell system. Our results show that intermediate fluctuations reduce disorder and guide the multicell lattice toward checkerboard-like patterns. By further analyzing cell fate transition events, we demonstrate that intermediate noise amplitudes provide enough perturbation to facilitate “proofreading” of disordered patterns and cause cells to switch to the correct ordered state (Sender surrounded by Receivers, and vice versa). Conversely, high noise can override environmental signals coming from neighboring cells and lead to switching between ordered and disordered patterns. Therefore, in analogy with spin glass systems, intermediate noise levels allow the multicell Notch system to escape frustrated patterns and relax towards the lower energy checkerboard pattern while at large noise levels the system is unable to find this ordered base of attraction. | en_US |
| dc.identifier.citation | Galbraith, Madeline, Bocci, Federico and Onuchic, José N.. "Stochastic fluctuations promote ordered pattern formation of cells in the Notch-Delta signaling pathway." <i>PLOS Computational Biology,</i> 18, no. 7 (2022) Public Library of Science: https://doi.org/10.1371/journal.pcbi.1010306. | en_US |
| dc.identifier.digital | journal-pcbi-1010306 | en_US |
| dc.identifier.doi | https://doi.org/10.1371/journal.pcbi.1010306 | en_US |
| dc.identifier.uri | https://hdl.handle.net/1911/113168 | en_US |
| dc.language.iso | eng | en_US |
| dc.publisher | Public Library of Science | en_US |
| dc.rights | This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. | en_US |
| dc.rights.uri | https://creativecommons.org/licenses/by/4.0/ | en_US |
| dc.title | Stochastic fluctuations promote ordered pattern formation of cells in the Notch-Delta signaling pathway | en_US |
| dc.type | Journal article | en_US |
| dc.type.dcmi | Text | en_US |
| dc.type.publication | publisher version | en_US |
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