Oncogene Concatenated Enriched Amplicon Nanopore Sequencing for rapid, accurate, and affordable somatic mutation detection

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dc.citation.articleNumber227en_US
dc.citation.journalTitleGenome Biologyen_US
dc.citation.volumeNumber22en_US
dc.contributor.authorThirunavukarasu, Deepaken_US
dc.contributor.authorCheng, Lauren Y.en_US
dc.contributor.authorSong, Pingen_US
dc.contributor.authorChen, Sherry X.en_US
dc.contributor.authorBorad, Mitesh J.en_US
dc.contributor.authorKwong, Lawrenceen_US
dc.contributor.authorJames, Phillipen_US
dc.contributor.authorTurner, Daniel J.en_US
dc.contributor.authorZhang, David Yuen_US
dc.date.accessioned2021-09-21T15:37:38Zen_US
dc.date.available2021-09-21T15:37:38Zen_US
dc.date.issued2021en_US
dc.description.abstractWe develop the Oncogene Concatenated Enriched Amplicon Nanopore Sequencing (OCEANS) method, in which variants with low variant allele frequency (VAFs) are amplified and subsequently concatenated for Nanopore Sequencing. OCEANS allows accurate detection of somatic mutations with VAF limits of detection between 0.05 and 1%. We construct 4 distinct multi-gene OCEANS panels targeting recurrent mutations in acute myeloid leukemia, melanoma, non-small- cell lung cancer, and hepatocellular carcinoma and validate them on clinical samples. By demonstrating detection of low VAF single nucleotide variant mutations using Nanopore Sequencing, OCEANS is poised to enable same-day clinical sequencing panels.en_US
dc.identifier.citationThirunavukarasu, Deepak, Cheng, Lauren Y., Song, Ping, et al.. "Oncogene Concatenated Enriched Amplicon Nanopore Sequencing for rapid, accurate, and affordable somatic mutation detection." <i>Genome Biology,</i> 22, (2021) Springer: https://doi.org/10.1186/s13059-021-02449-1.en_US
dc.identifier.digitalOncogeneConcatenatedEnrichedAmen_US
dc.identifier.doihttps://doi.org/10.1186/s13059-021-02449-1en_US
dc.identifier.urihttps://hdl.handle.net/1911/111369en_US
dc.language.isoengen_US
dc.publisherSpringeren_US
dc.rightsThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.en_US
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/.en_US
dc.titleOncogene Concatenated Enriched Amplicon Nanopore Sequencing for rapid, accurate, and affordable somatic mutation detectionen_US
dc.typeJournal articleen_US
dc.type.dcmiTexten_US
dc.type.publicationpublisher versionen_US
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