An apparatus has a data acquisition device, an environmental cell in a spatial registration relative to the data acquisition device, the environmental cell being configured to support a sample, and a fluid management system configured to initiate and discontinue exposure of the sample to a reaction fluid while the spatial registration is maintained. A method of performing data acquisition for a sample includes spatially registering the sample relative to a data acquisition device, at least partially exposing the sample to a reaction fluid while substantially maintaining the spatial registration of the sample relative to the data acquisition device, at least partially discontinuing exposing the sample to the reaction fluid while substantially maintaining the spatial registration of the sample relative to the data acquisition device, and acquiring data about the sample while substantially maintaining the spatial registration of the sample relative to the data acquisition device.