A pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits

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dc.citation.firstpage1252en_US
dc.citation.issueNumber5en_US
dc.citation.journalTitleThe Plant Journalen_US
dc.citation.lastpage1266en_US
dc.citation.volumeNumber111en_US
dc.contributor.authorGarg, Gaganen_US
dc.contributor.authorKamphuis, Lars G.en_US
dc.contributor.authorBayer, Philipp E.en_US
dc.contributor.authorKaur, Parwinderen_US
dc.contributor.authorDudchenko, Olgaen_US
dc.contributor.authorTaylor, Candy M.en_US
dc.contributor.authorFrick, Karen M.en_US
dc.contributor.authorFoley, Rhonda C.en_US
dc.contributor.authorGao, Ling-Lingen_US
dc.contributor.authorAiden, Erez Liebermanen_US
dc.contributor.authorEdwards, Daviden_US
dc.contributor.authorSingh, Karam B.en_US
dc.contributor.orgCenter for Theoretical Biological Physicsen_US
dc.date.accessioned2022-09-29T15:06:31Zen_US
dc.date.available2022-09-29T15:06:31Zen_US
dc.date.issued2022en_US
dc.description.abstractNarrow-leafed lupin (NLL; Lupinus angustifolius) is a key rotational crop for sustainable farming systems, whose grain is high in protein content. It is a gluten-free, non-genetically modified, alternative protein source to soybean (Glycine max) and as such has gained interest as a human food ingredient. Here, we present a chromosome-length reference genome for the species and a pan-genome assembly comprising 55 NLL lines, including Australian and European cultivars, breeding lines and wild accessions. We present the core and variable genes for the species and report on the absence of essential mycorrhizal associated genes. The genome and pan-genomes of NLL and its close relative white lupin (Lupinus albus) are compared. Furthermore, we provide additional evidence supporting LaRAP2-7 as the key alkaloid regulatory gene for NLL and demonstrate the NLL genome is underrepresented in classical NLR disease resistance genes compared to other sequenced legume species. The NLL genomic resources generated here coupled with previously generated RNA sequencing datasets provide new opportunities to fast-track lupin crop improvement.en_US
dc.identifier.citationGarg, Gagan, Kamphuis, Lars G., Bayer, Philipp E., et al.. "A pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits." <i>The Plant Journal,</i> 111, no. 5 (2022) Wiley: 1252-1266. https://doi.org/10.1111/tpj.15885.en_US
dc.identifier.digitalThePlantJournal-2022-Gargen_US
dc.identifier.doihttps://doi.org/10.1111/tpj.15885en_US
dc.identifier.urihttps://hdl.handle.net/1911/113438en_US
dc.language.isoengen_US
dc.publisherWileyen_US
dc.rightsThis is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.en_US
dc.rights.urihttps://creativecommons.org/licenses/by-nc-nd/4.0/en_US
dc.titleA pan-genome and chromosome-length reference genome of narrow-leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traitsen_US
dc.typeJournal articleen_US
dc.type.dcmiTexten_US
dc.type.publicationpublisher versionen_US
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