Coastal reclamation is a global threat to coastal wetland ecosystems, but the impacts of coastal reclamation on belowground biodiversity and their consequences for ecosystem nutrient cycling remain poorly understood. In this study, we examined soil bacterial communities, bacterial co-occurrence pattern and soil multi-nutrient cycling index after natural vegetated coastal wetlands were converted for 6-year and 30-year rice-wheat rotation fields. The soil multi-nutrient cycling index was higher in 6-year and 30-year rice-wheat rotation fields than natural vegetated coastal wetlands. For bacterial community, rice-wheat rotation reclamation increased soil bacterial alpha diversity but decreased beta diversity and co-occurrence network complexity than those in the vegetated coastal wetland. Rice-wheat rotation reclamation also changed soil bacterial community assemblages by increasing the relative abundance of Actinobacteriota and Desulfobacterota while decreasing the relative abundance of Alphaproteobacteria and Gammproteobacteria. Changes in the relative importance of dispersal limitation and homogenizing dispersal mainly controlled the variations in soil bacterial community assemblages. Soil bacterial community variations induced by rice-wheat reclamation were strongly related to soil multi-nutrient cycling, especially bacterial connection complexity. Our results provide experimental support that belowground microbial interactions are crucial for maintaining ecosystem functioning.