The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima

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dc.citation.firstpagee1002005en_US
dc.citation.issueNumber11en_US
dc.citation.journalTitlePLoS Biologyen_US
dc.citation.volumeNumber12en_US
dc.contributor.authorChipman, Ariel D.en_US
dc.contributor.authorFerrier, David E.K.en_US
dc.contributor.authorBrena, Carloen_US
dc.contributor.authorQu, Jiaxinen_US
dc.contributor.authorHughes, Daniel S.T.en_US
dc.contributor.authorSchrӧder, Reinharden_US
dc.contributor.authorTorres-Oliva, Montserraten_US
dc.contributor.authorZnassi, Nadiaen_US
dc.contributor.authorJiang, Huaiyangen_US
dc.contributor.authorAlmeida, Francisca C.en_US
dc.contributor.authorAlonso, Claudio R.en_US
dc.contributor.authorApostolou, Zivkosen_US
dc.contributor.authorAqrawi, Peshtewanien_US
dc.contributor.authorArthur, Wallaceen_US
dc.contributor.authorBarna, Jennifer C.J.en_US
dc.contributor.authorBlankenburg, Kerstin P.en_US
dc.contributor.authorBrites, Danielaen_US
dc.contributor.authorCapella-Gutiérrez, Salvadoren_US
dc.contributor.authorCoyle, Marcusen_US
dc.contributor.authorDearden, Peter K.en_US
dc.contributor.authorDu Pasquier, Louisen_US
dc.contributor.authorDuncan, Elizabeth J.en_US
dc.contributor.authorEbert, Dieteren_US
dc.contributor.authorEibner, Corneliusen_US
dc.contributor.authorErikson, Galinaen_US
dc.contributor.authorEvans, Peter D.en_US
dc.contributor.authorExtavour, Cassandra G.en_US
dc.contributor.authorFrancisco, Liezlen_US
dc.contributor.authorGabaldón, Tonien_US
dc.contributor.authorGillis, William J.en_US
dc.contributor.authorGoodwin-Horn, Elizabeth A.en_US
dc.contributor.authorGreen, Jack E.en_US
dc.contributor.authorGriffiths-Jones, Samen_US
dc.contributor.authorGrimmelikhuijzen, Cornelis J.P.en_US
dc.contributor.authorGubbala, Saien_US
dc.contributor.authorGuigó, Rodericen_US
dc.contributor.authorHan, Yien_US
dc.contributor.authorHauser, Franken_US
dc.contributor.authorHavlak, Paulen_US
dc.contributor.authorHayden, Lukeen_US
dc.contributor.authorHelbing, Sophieen_US
dc.contributor.authorHolder, Michaelen_US
dc.contributor.authorHui, Jerome H.L.en_US
dc.contributor.authorHunn, Julia P.en_US
dc.contributor.authorHunnekuhl, Vera S.en_US
dc.contributor.authorJackson, LaRondaen_US
dc.contributor.authorJavaid, Mehwishen_US
dc.contributor.authorJhangiani, Shalini N.en_US
dc.contributor.authorJiggins, Francis M.en_US
dc.contributor.authorJones, Tamsin E.en_US
dc.contributor.authorKaiser, Tobias S.en_US
dc.contributor.authorKalra, Divyaen_US
dc.contributor.authorKenny, Nathan J.en_US
dc.contributor.authorKorchina, Viktoriyaen_US
dc.contributor.authorKovar, Christie L.en_US
dc.contributor.authorKraus, F. Bernharden_US
dc.contributor.authorLapraz, Françoisen_US
dc.contributor.authorLee, Sandra L.en_US
dc.contributor.authorLv, Jieen_US
dc.contributor.authorMandapat, Christigaleen_US
dc.contributor.authorManning, Gerarden_US
dc.contributor.authorMariotti, Marcoen_US
dc.contributor.authorMata, Roberten_US
dc.contributor.authorMathew, Tittuen_US
dc.contributor.authorNeumann, Tobiasen_US
dc.contributor.authorNewsham, Ireneen_US
dc.contributor.authorNgo, Dinh N.en_US
dc.contributor.authorNinova, Mariaen_US
dc.contributor.authorOkwuonu, Geoffreyen_US
dc.contributor.authorOngeri, Fionaen_US
dc.contributor.authorPalmer, William J.en_US
dc.contributor.authorPatil, Shobhaen_US
dc.contributor.authorPatraquim, Pedroen_US
dc.contributor.authorPham, Christopheren_US
dc.contributor.authorPu, Ling-Lingen_US
dc.contributor.authorPutman, Nicholas H.en_US
dc.contributor.authorRabouille, Catherineen_US
dc.contributor.authorRamos, Olivia Mendivilen_US
dc.contributor.authorRhodes, Adelaide C.en_US
dc.contributor.authorRobertson, Helen E.en_US
dc.contributor.authorRobertson, Hugh M.en_US
dc.contributor.authorRonshaugen, Matthewen_US
dc.contributor.authorRozas, Julioen_US
dc.contributor.authorSaada, Nehaden_US
dc.contributor.authorSánchez-Gracia, Alejandroen_US
dc.contributor.authorScherer, Steven E.en_US
dc.contributor.authorSchurko, Andrew M.en_US
dc.contributor.authorSiggens, Kenneth W.en_US
dc.contributor.authorSimmons, DeNarden_US
dc.contributor.authorStief, Annaen_US
dc.contributor.authorStolle, Eckarten_US
dc.contributor.authorTelford, Maximilian J.en_US
dc.contributor.authorTessmar-Raible, Kristinen_US
dc.contributor.authorThornton, Rebeccaen_US
dc.contributor.authorvan der Zee, Maurijnen_US
dc.contributor.authorvon Haeseler, Arndten_US
dc.contributor.authorWilliams, James M.en_US
dc.contributor.authorWillis, Judith H.en_US
dc.contributor.authorWu, Yuanqingen_US
dc.contributor.authorZou, Xiaoyanen_US
dc.contributor.authorLawson, Danielen_US
dc.contributor.authorMuzny, Donna M.en_US
dc.contributor.authorWorley, Kim C.en_US
dc.contributor.authorGibbs, Richard A.en_US
dc.contributor.authorAkam, Michaelen_US
dc.contributor.authorRichards, Stephenen_US
dc.date.accessioned2015-01-06T19:20:35Zen_US
dc.date.available2015-01-06T19:20:35Zen_US
dc.date.issued2014en_US
dc.description.abstractMyriapods (e.g., centipedes and millipedes) display a simple homonomous body plan relative to other arthropods. All members of the class are terrestrial, but they attained terrestriality independently of insects. Myriapoda is the only arthropod class not represented by a sequenced genome. We present an analysis of the genome of the centipede Strigamia maritima. It retains a compact genome that has undergone less gene loss and shuffling than previously sequenced arthropods, and many orthologues of genes conserved from the bilaterian ancestor that have been lost in insects. Our analysis locates many genes in conserved macro-synteny contexts, and many small-scale examples of gene clustering. We describe several examples where S. maritima shows different solutions from insects to similar problems. The insect olfactory receptor gene family is absent from S. maritima, and olfaction in air is likely effected by expansion of other receptor gene families. For some genes S. maritima has evolved paralogues to generate coding sequence diversity, where insects use alternate splicing. This is most striking for the Dscam gene, which in Drosophila generates more than 100,000 alternate splice forms, but in S. maritima is encoded by over 100 paralogues. We see an intriguing linkage between the absence of any known photosensory proteins in a blind organism and the additional absence of canonical circadian clock genes. The phylogenetic position of myriapods allows us to identify where in arthropod phylogeny several particular molecular mechanisms and traits emerged. For example, we conclude that juvenile hormone signalling evolved with the emergence of the exoskeleton in the arthropods and that RR-1 containing cuticle proteins evolved in the lineage leading to Mandibulata. We also identify when various gene expansions and losses occurred. The genome of S. maritima offers us a unique glimpse into the ancestral arthropod genome, while also displaying many adaptations to its specific life history.en_US
dc.identifier.citationChipman, Ariel D., Ferrier, David E.K., Brena, Carlo, et al.. "The First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritima." <i>PLoS Biology,</i> 12, no. 11 (2014) Public Library of Science: e1002005. http://dx.doi.org/10.1371/journal.pbio.1002005.en_US
dc.identifier.doihttp://dx.doi.org/10.1371/journal.pbio.1002005en_US
dc.identifier.urihttps://hdl.handle.net/1911/78900en_US
dc.language.isoengen_US
dc.publisherPublic Library of Scienceen_US
dc.rightsThis is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.en_US
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/en_US
dc.titleThe First Myriapod Genome Sequence Reveals Conservative Arthropod Gene Content and Genome Organisation in the Centipede Strigamia maritimaen_US
dc.typeJournal articleen_US
dc.type.dcmiTexten_US
dc.type.publicationpublisher versionen_US
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