Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics

Simple item page
dc.citation.firstpageW356
dc.citation.journalTitleNucleic Acids Research
dc.citation.lastpageW360
dc.citation.volumeNumber44
dc.contributor.authorParra, R. Gonzalo
dc.contributor.authorSchafer, Nicholas P.
dc.contributor.authorRadusky, Leandro G.
dc.contributor.authorTsai, Min-Yeh
dc.contributor.authorGuzovsky, A. Brenda
dc.contributor.authorWolynes, Peter G.
dc.contributor.authorFerreiro, Diego U.
dc.contributor.orgCenter for Theoretical Biological Physics
dc.date.accessioned2016-07-06T19:28:53Z
dc.date.available2016-07-06T19:28:53Z
dc.date.issued2016
dc.description.abstractThe protein frustratometer is an energy landscape theory-inspired algorithm that aims at localizing and quantifying the energetic frustration present in protein molecules. Frustration is a useful concept for analyzing proteins' biological behavior. It compares the energy distributions of the native state with respect to structural decoys. The network of minimally frustrated interactions encompasses the folding core of the molecule. Sites of high local frustration often correlate with functional regions such as binding sites and regions involved in allosteric transitions. We present here an upgraded version of a webserver that measures local frustration. The new implementation that allows the inclusion of electrostatic energy terms, important to the interactions with nucleic acids, is significantly faster than the previous version enabling the analysis of large macromolecular complexes within a user-friendly interface. The webserver is freely available at URL:ﾠhttp://frustratometer.qb.fcen.uba.ar.
dc.identifier.citationParra, R. Gonzalo, Schafer, Nicholas P., Radusky, Leandro G., et al.. "Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics." <i>Nucleic Acids Research,</i> 44, (2016) Oxford University Press: W356-W360. http://dx.doi.org/10.1093/nar/gkw304.
dc.identifier.doihttp://dx.doi.org/10.1093/nar/gkw304
dc.identifier.urihttps://hdl.handle.net/1911/90813
dc.language.isoeng
dc.publisherOxford University Press
dc.rightsThis is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
dc.rights.urihttps://creativecommons.org/licenses/by-nc/4.0/
dc.titleProtein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics
dc.typeJournal article
dc.type.dcmiText
dc.type.publicationpublisher version
Files
Original bundle
Now showing 1 - 1 of 1
Thumbnail Image
Name:
2016-Parra-W356-60.pdf
Size:
2.16 MB
Format:
Adobe Portable Document Format
Download
Collections
Faculty Publications
Chemistry Publications