Cooperative assembly confers regulatory specificity and long-term genetic circuit stability

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dc.citation.firstpage3810
dc.citation.issueNumber18
dc.citation.journalTitleCell
dc.citation.lastpage3.83E+21
dc.citation.volumeNumber186
dc.contributor.authorBragdon, Meghan D. J.
dc.contributor.authorPatel, Nikit
dc.contributor.authorChuang, James
dc.contributor.authorLevien, Ethan
dc.contributor.authorBashor, Caleb J.
dc.contributor.authorKhalil, Ahmad S.
dc.date.accessioned2024-05-08T18:56:08Z
dc.date.available2024-05-08T18:56:08Z
dc.date.issued2023
dc.description.abstractA ubiquitous feature of eukaryotic transcriptional regulation is cooperative self-assembly between transcription factors (TFs) and DNA cis-regulatory motifs. It is thought that this strategy enables specific regulatory connections to be formed in gene networks between otherwise weakly interacting, low-specificity molecular components. Here, using synthetic gene circuits constructed in yeast, we find that high regulatory specificity can emerge from cooperative, multivalent interactions among artificial zinc-finger-based TFs. We show that circuits “wired” using the strategy of cooperative TF assembly are effectively insulated from aberrant misregulation of the host cell genome. As we demonstrate in experiments and mathematical models, this mechanism is sufficient to rescue circuit-driven fitness defects, resulting in genetic and functional stability of circuits in long-term continuous culture. Our naturally inspired approach offers a simple, generalizable means for building high-fidelity, evolutionarily robust gene circuits that can be scaled to a wide range of host organisms and applications.
dc.identifier.citationBragdon, M. D. J., Patel, N., Chuang, J., Levien, E., Bashor, C. J., & Khalil, A. S. (2023). Cooperative assembly confers regulatory specificity and long-term genetic circuit stability. Cell, 186(18), 3810-3825.e18. https://doi.org/10.1016/j.cell.2023.07.012
dc.identifier.digital1-s20-S0092867423007456-main
dc.identifier.doihttps://doi.org/10.1016/j.cell.2023.07.012
dc.identifier.urihttps://hdl.handle.net/1911/115641
dc.language.isoeng
dc.publisherElsevier
dc.rightsExcept where otherwise noted, this work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives (CC BY-NC-ND) license. Permission to reuse, publish, or reproduce the work beyond the terms of the license or beyond the bounds of fair use or other exemptions to copyright law must be obtained from the copyright holder.
dc.rights.urihttps://creativecommons.org/licenses/by-nc-nd/4.0/
dc.titleCooperative assembly confers regulatory specificity and long-term genetic circuit stability
dc.typeJournal article
dc.type.dcmiText
dc.type.publicationpublisher version
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