Kinetic and statistical approaches in metabolic networks

Simple item page
dc.contributor.advisorGonzalez, Ramon
dc.creatorRigou, Venetia
dc.date.accessioned2018-12-03T18:32:05Z
dc.date.available2018-12-03T18:32:05Z
dc.date.issued2008
dc.description.abstractThe work in the current thesis is focused on the metabolomics field. In general, studies in this area concentrate on obtaining information concerning the metabolites found in a biological sample. Acquiring and analyzing metabolome data provides a better understanding of the bionetwork's mechanisms. The first part of the thesis focalizes on analyzing metabolome data measured from plant systems. The proposed methodology is based on Principal Component Analysis. The primary goal is to reduce the dimensionality of a large dataset while retaining most of the associated information. The aforementioned methodology additionally provides the chance to obtain assay signatures by using metabolite contributions. Its importance relies on the fact that we are able to define the biomarkers in a biological sample and thus, providing a mean to further examine a desirable cellular function. The second part of the thesis introduces the development of a kinetic model, implemented to describe the anaerobic fermentation of glycerol in Escherichia coli. Setting up the overall model required obtaining the parameters from the literature, and determining the kinetic expressions for each enzyme. The results include the acquisition of the metabolite profiles over time, plus their steady-state concentrations. Additionally, Metabolic Control Analysis was applied to the steady-state conditions, in order to obtain an insight of which enzymes can be considered responsible for the control of flux. The accuracy of the outcome could be verified if the computational efforts were combined with experimental work. The results derived from the kinetic modeling of the anaerobic fermentation of glycerol underline the importance of utilizing methodologies that eliminate the need of kinetic data, like metabolic flux analysis, or the incorporation of non-mechanistic methods, like the log-linear approximation.
dc.format.extent169 pp
dc.identifier.callnoTHESIS CH.E. 2009 RIGOU
dc.identifier.citationRigou, Venetia. "Kinetic and statistical approaches in metabolic networks." (2008) Master’s Thesis, Rice University. <a href="https://hdl.handle.net/1911/103641">https://hdl.handle.net/1911/103641</a>.
dc.identifier.digital304533001
dc.identifier.urihttps://hdl.handle.net/1911/103641
dc.language.isoeng
dc.rightsCopyright is held by the author, unless otherwise indicated. Permission to reuse, publish, or reproduce the work beyond the bounds of fair use or other exemptions to copyright law must be obtained from the copyright holder.
dc.subjectChemical engineering
dc.subjectApplied sciences
dc.titleKinetic and statistical approaches in metabolic networks
dc.typeThesis
dc.type.materialText
thesis.degree.departmentChemical Engineering
thesis.degree.disciplineEngineering
thesis.degree.grantorRice University
thesis.degree.levelMasters
thesis.degree.nameMaster of Science
Files
Original bundle
Now showing 1 - 1 of 1
Thumbnail Image
Name:
304533001.pdf
Size:
4.42 MB
Format:
Adobe Portable Document Format
Download
Collections
Rice University Electronic Theses and Dissertations