Development and Characterization of Split Methyl Halide Transferase for Biosensor Applications in Soil

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dc.contributor.advisorSilberg, Jonathan J.
dc.contributor.advisorBennett, George N.
dc.creatorHuh, Dongkuk
dc.date.accessioned2019-09-12T21:21:15Z
dc.date.available2019-09-12T21:21:15Z
dc.date.created2019-08
dc.date.issued2019-09-10
dc.date.submittedAugust 2019
dc.date.updated2019-09-12T21:21:15Z
dc.description.abstractSoil microorganisms contribute to agricultural productivity by forming symbiosis with plant roots and affecting the solubility of soil nutrients. Microbiological activity in soil can be monitored directly by coupling the expression of a methyl halide transferase (MHT) to a conditional reporter. This unique bioreporter can provide information about microbial sensing and behaviors without disrupting soil. However, MHT reporting has only been used to report on slow transcriptional processes, limiting its utility. To overcome this challenge, I have created a split MHT (SMHT) that consists of two MHT fragments that are only functional when reconstituted. This SMHT was rationally designed using family sequence information and shown to exhibit MHT-fragment complementation upon fusion to different pairs of interacting proteins. Furthermore, a rapamycin biosensor was constructed that links the detection of rapamycin, a secondary metabolite synthesized by a soil microorganism, to SMHT fragment complementation. The SMHT should be generally useful for reporting on conditional protein-protein interactions in hard-to-image soils and sediments.
dc.format.mimetypeapplication/pdf
dc.identifier.citationHuh, Dongkuk. "Development and Characterization of Split Methyl Halide Transferase for Biosensor Applications in Soil." (2019) Master’s Thesis, Rice University. <a href="https://hdl.handle.net/1911/107401">https://hdl.handle.net/1911/107401</a>.
dc.identifier.urihttps://hdl.handle.net/1911/107401
dc.language.isoeng
dc.rightsCopyright is held by the author, unless otherwise indicated. Permission to reuse, publish, or reproduce the work beyond the bounds of fair use or other exemptions to copyright law must be obtained from the copyright holder.
dc.subjectMethyl halide transferase
dc.subjectMultiple sequence alignment
dc.subjectProtein fragment complementation assay
dc.subjectGas bioreporter
dc.subjectProtein engineering
dc.titleDevelopment and Characterization of Split Methyl Halide Transferase for Biosensor Applications in Soil
dc.typeThesis
dc.type.materialText
thesis.degree.departmentBiochemistry and Cell Biology
thesis.degree.disciplineNatural Sciences
thesis.degree.grantorRice University
thesis.degree.levelMasters
thesis.degree.majorProtein engineering and Synthetic Biology
thesis.degree.nameMaster of Science
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