High-Throughput Discovery of Input Stimuli of Bacterial Two-Component Systems

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dc.contributor.advisorTabor, Jeffrey J.
dc.contributor.committeeMemberMartí, Angel A.
dc.creatorBrink, Kathryn Renee
dc.date.accessioned2021-08-16T19:17:24Z
dc.date.available2022-08-01T05:01:12Z
dc.date.created2021-08
dc.date.issued2021-07-22
dc.date.submittedAugust 2021
dc.date.updated2021-08-16T19:17:24Z
dc.description.abstractTwo-component systems (TCSs) are the largest class of biological signal transduction pathways and an important class of bacterial sensors. In their native contexts, TCSs enable bacteria to sense and respond to changes in their environment. TCSs are also a major source of novel biosensors for medical, environmental, and industrial applications. In the first portion of this work, we use TCS engineering and chemical input screens to characterize TCSs of unknown function from Shewanella oneidensis. Through these screens, we discover a pH-responsive TCS, which we apply to detect acidification of intestinal tissues in a mouse model of inflammatory bowel disease. In the second portion of this work, we develop a high-throughput screening approach for characterizing peptide-TCS interactions. We screen PhoPQ, a virulence-regulating TCS from Salmonella Typhimurium, against 117 human antimicrobial peptides (AMPs). We discover 13 novel activators of PhoPQ comprising diverse sequences, structures, and biological functions and identify subdomains and peptide biophysical features responsible for PhoPQ activation. Finally, we find that PhoPQ homologs exhibit distinct AMP response profiles, suggesting a role for evolutionary adaptation in AMP sensing. The engineering approaches developed here enable high-throughput discovery and characterization of TCS inputs, which could provide important insights into bacterial stimulus response and reveal novel biosensors with applications across a wide range of sectors.
dc.embargo.terms2022-08-01
dc.format.mimetypeapplication/pdf
dc.identifier.citationBrink, Kathryn Renee. "High-Throughput Discovery of Input Stimuli of Bacterial Two-Component Systems." (2021) Diss., Rice University. <a href="https://hdl.handle.net/1911/111191">https://hdl.handle.net/1911/111191</a>.
dc.identifier.urihttps://hdl.handle.net/1911/111191
dc.language.isoeng
dc.rightsCopyright is held by the author, unless otherwise indicated. Permission to reuse, publish, or reproduce the work beyond the bounds of fair use or other exemptions to copyright law must be obtained from the copyright holder.
dc.subjecttwo-component system
dc.subjectsynthetic biology
dc.subjectbiosensor
dc.titleHigh-Throughput Discovery of Input Stimuli of Bacterial Two-Component Systems
dc.typeThesis
dc.type.materialText
thesis.degree.departmentSystems, Synthetic and Physical Biology
thesis.degree.disciplineNatural Sciences
thesis.degree.grantorRice University
thesis.degree.levelDoctoral
thesis.degree.nameDoctor of Philosophy
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